Here is the initial view :

Then, when I click on one of the top checkbox, the following column hides by remove it from the array 'selectedColumnLabels'. Then, I got the warning :

Here is my component code :

import React, { Component } from 'react';
import {MDBDataTable, MDBInput  } from 'mdbreact';
import "mdbreact/dist/css/mdb.css";

const customerName =  {
    label: 'Client',
    field: 'customerName',
    sort: 'asc',
    width: 100,
};
const siteName =  {
    label: 'Site',
    field: 'siteName',
    sort: 'asc',
    width: 100,
};
const lineName =  {
    label: 'Ligne',
    field: 'lineName',
    sort: 'asc',
    width: 100,
};

const INITIAL_STATE = {
    loading: true,
    //COLONNES SELECTIONNEES PAR DEFAUT
    selectedColumnsLabels: [customerName.field, siteName.field, lineName.field],
    allColumns: [customerName, siteName, lineName],
    rowsData: null,

};
const rowsData = [
    {
        customerName: 'Tiger Nixon',
        siteName: 'System Architect',
        lineName: 'Edinburgh',
    },
    {
        customerName: 'Tiger Nixon',
        siteName: 'System Architect',
        lineName: 'Edinburgh',
    },
    {
        customerName: 'Tiger Nixon',
        siteName: 'System Architect',
        lineName: 'Edinburgh',
    }];
class Feedback extends Component {
    _isMounted = false;
    constructor(props) {
        super(props);
        this.state = {
            ...INITIAL_STATE};
    }
    componentDidMount() {
        this._isMounted = true;
    }

    toggleColumn = (e) => {
        const {selectedColumnsLabels} = this.state;
        selectedColumnsLabels.includes(e.target.id) ? selectedColumnsLabels.splice(selectedColumnsLabels.indexOf(e.target.id), 1) : selectedColumnsLabels.push(e.target.id);
        this.setState(prevState => {return {selectedColumnsLabels: selectedColumnsLabels}});
    };

    render() {
        this.INITIAL_STATE = this.state;
        const { selectedColumnsLabels, allColumns} = this.state;
        let selectedColumns = [];
        allColumns.map((element) => {
            if(selectedColumnsLabels.includes(element.field))selectedColumns.push(element);
        });
        return (
            <div style={{backgroundColor: '#fff'}}>
                <Header isDisconnected={this.INITIAL_STATE.isDisconnected}/>
                    <div id="wrapper-feedback" className={'feedback'}>
                        <div className={'row col-sm-12 checkboxLine'}>
                            {allColumns.map((element, index) => (
                                    selectedColumnsLabels.includes(element.field) ?
                                        <div className="custom-control custom-checkbox" key={index}>
                                            <input type="checkbox" ref={this.input} className="custom-control-input" id={element.field} checked onChange={e => this.toggleColumn(e)}/>
                                            <label className="custom-control-label" htmlFor={element.field}>{element.label}</label>
                                        </div>
                                        :
                                        <div className="custom-control custom-checkbox" key={index}>
                                            <input type="checkbox" className="custom-control-input aaa" id={element.field} checked={false} onChange={e => this.toggleColumn(e)}/>
                                            <label className="custom-control-label" htmlFor={element.field}>{element.label}</label>
                                        </div>
                                )
                            )}
                        </div>
                        <div className={this.props.type}>
                            <MDBDataTable
                                bordered
                                hover
                                selected
                                disableRetreatAfterSorting
                                data={{columns: selectedColumns, rows: rowsData}}
                                noRecordsFoundLabel = "Aucun feedback disponible"
                                searchLabel="Rechercher"
                                paginationLabel={["Précédent", "Prochain"]}
                                infoLabel={["Résultats", "à", "sur", "résultats"]}
                                entriesLabel="Nombre de ligne"
                                entriesOptions={[5, 10, 25, 50]}
                                sortRows={[customerName.field,siteName.field,lineName.field,]}
                            />
                        </div>
                    </div>
            </div>
        );
    }
}

export default Feedback;

If you have any question about the process, feel free to ask me. Thanks for the help, Antoine